Stem-loop sequence ssc-mir-194a

Accession

MI0022137 (change log)

Description

Sus scrofa miR-194a stem-loop

Gene family

MIPF0000055; mir-194

Literature search

11 open access papers mention ssc-mir-194a
(30 sentences)

Stem-loop

   ug       cu         a      g     g  c 
5'   ccacccc  guaacagca cuccau uggaa ug c
     |||||||  ||||||||| |||||| ||||| || c
3'   ggugggg  uauugucgu ggggug accuu au a
   gg       uc         c      -     g  c 

Deep sequencing

49 reads, 0 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Sscrofa10.2; GCA_000003025.4): chr2: 6416779-6416854 [+]
• Overlapping transcripts:

  sense

  ENSSSCT00000021501 ; ssc-mir-194a.1-201; exon 1

Clustered miRNAs

< 10kb from ssc-mir-194a

• ssc-mir-194a: chr2: 6416779-6416854 [+]
• ssc-mir-192: chr2: 6416980-6417059 [+]

Database links

• miRBase Tracker:MI0022137

Mature sequence ssc-miR-194a-5p

• Accession: MIMAT0025368
• Sequence: 11 - uguaacagcaacuccaugugg - 31
• Deep sequencing: 49 reads, 11 experiments
• Evidence: experimental; Illumina [1]

Mature sequence ssc-miR-194a-3p

• Accession: MIMAT0037465
• Sequence: 47 - ccaguggggcugcuguuaucu - 67
• Evidence: experimental; Illumina [2]

References

1. PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).
2. PMID:25230983 "The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing" Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M J Appl Genet. 56:239-252(2015).