Stem-loop sequence ssc-mir-150-1

Accession

MI0022133 (change log)

Description

Sus scrofa miR-150-1 stem-loop

Gene family

MIPF0000197; mir-150

Literature search

10 open access papers mention ssc-mir-150-1
(27 sentences)

Stem-loop

   -   -  -    au      ac   u       -u  gug 
5'  cuc gg cccu  cuccca  ccu guaccag  gc   c
    ||| || ||||  ||||||  ||| |||||||  ||    
3'  ggg cc ggga  gggggu  gga caugguc  ug   c
   g   u  a    cg      aa   -       cc  acu 

Deep sequencing

59 reads, 0 reads per million, 12 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Sscrofa10.2; GCA_000003025.4): chr6: 50309879-50309955 [-]
• Overlapping transcripts:

  sense

  ENSSSCT00000029075 ; ssc-mir-150-2.1-201; exon 1

  antisense

  ENSSSCT00000003515 ; RPS11-201; exon 5

  ENSSSCT00000003516 ; RPL13A-201; intron 8

Database links

• miRBase Tracker:MI0022133

Mature sequence ssc-miR-150

• Accession: MIMAT0025365
• Sequence: 11 - ucucccaacccuuguaccagug - 32
• Deep sequencing: 112 reads, 12 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).