Stem-loop sequence ssc-mir-144

Accession

MI0022132 (change log)

Description

Sus scrofa miR-144 stem-loop

Gene family

MIPF0000093; mir-144

Literature search

11 open access papers mention ssc-mir-144
(17 sentences)

Stem-loop

       u      g        a         -a    gc 
5' gccc ggcugg auaucauc uauacugua  guuu  g
   |||| |||||| |||||||| |||||||||  ||||   
3' uggg cugauc uguaguag auaugacau  caga  a
       c      a        -         ca    gu 

Deep sequencing

13900 reads, 2.05e+03 reads per million, 15 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Sscrofa10.2; GCA_000003025.4): chr12: 47176953-47177028 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ssc-mir-144

• ssc-mir-144: chr12: 47176953-47177028 [+]
• ssc-mir-451: chr12: 47177114-47177178 [+]

Database links

• miRBase Tracker:MI0022132

Mature sequence ssc-miR-144

• Accession: MIMAT0025364
• Sequence: 48 - uacaguauagaugauguac - 66
• Deep sequencing: 13191 reads, 15 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).