Stem-loop sequence ssc-mir-132

Accession

MI0022129 (change log)

Description

Sus scrofa miR-132 stem-loop

Gene family

MIPF0000065; mir-132

Literature search

8 open access papers mention ssc-mir-132
(14 sentences)

Stem-loop

   --cucca    a         uuc          -g     
5'        gggc accguggcu   gauuguuacu  uggg 
          |||| |||||||||   ||||||||||  ||| a
3'        cccg ugguaccga   cugacaaugg  gcca 
   acgacgc    c         cau          ag     

Deep sequencing

212 reads, 0 reads per million, 15 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Sscrofa10.2; GCA_000003025.4): chr12: 50015722-50015799 [-]
• Overlapping transcripts:

  sense

  ENSSSCT00000020965 ; ssc-mir-132.1-201; exon 1

Clustered miRNAs

< 10kb from ssc-mir-132

• ssc-mir-212: chr12: 50016151-50016232 [-]
• ssc-mir-132: chr12: 50015722-50015799 [-]

Database links

• miRBase Tracker:MI0022129

Mature sequence ssc-miR-132

• Accession: MIMAT0025361
• Sequence: 47 - uaacagucuacagccauggucg - 68
• Deep sequencing: 141 reads, 15 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).