miRBase entry: ssc-mir-9-3

Stem-loop ssc-mir-9-3


Accession
MI0022123
Description
Sus scrofa ssc-mir-9-3 precursor miRNA
Gene family
MIPF0000014; mir-9

Literature search
9 open access papers mention ssc-mir-9-3
(60 sentences)

Sequence

106 reads, 127 reads per million, 10 experiments
cccguuucucUCUUUGGUUAUCUAGCUGUAUGagugccacagagccgucauaaagcuagauaaccgaaaguagaaaugacu
..(((((((((.(((((((((((((((.(((((..((......))..))))).))))))))))))))))).)))))))...

Structure
-cc       -  C               G     gu  ca 
   cguuucu cU UUUGGUUAUCUAGCU UAUGa  gc  c
   ||||||| || ||||||||||||||| |||||  ||   
   guaaaga ga aagccaauagaucga auacu  cg  a
uca       u  -               a     gc  ag 


Annotation confidence Not enough data
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Genome context
chr7: 59924193-59924273 [+]

Database links

Mature ssc-miR-9

Accession MIMAT0025358
Description Sus scrofa ssc-miR-9 mature miRNA
Sequence 11 - UCUUUGGUUAUCUAGCUGUAUG - 32
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  2. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100