Stem-loop pde-MIR952c

Accession

MI0022110

Description

Pinus densata pde-MIR952c precursor miRNA

Gene family

MIPF0000426; MIR952

Literature search

1 open access papers mention pde-MIR952c
(2 sentences)

Sequence

gcgagcuaucgaaggagagaaccaguggcguauugAACAGAACAUGCCAUUGGUGgaguaaguacgucaaggcacgaaacagaauuaauuuugauuaacguuuuauuaaccuucaacucugcauuggccuauggcaguuccucaaggucacaucgauggacugggggcgugauacaaggcguaguccgcugguuucugccaccguugggacucuccccaaccuauucucagcugcaacauucacaaguuauuuacaauguugcauccgagaauaaaaugggaagacugcaaagcgucgcaacaaccagcuuuguaucagcgccccaacuggugugaguuuggggaacugccacaugccaagccagacuugcaugcuaguaaaacauuauucgaaauuacuucuauuuuguuuguugacauacuuccuccgccaaugacacgcucaguucaauuugcugaugguuc
.(((....))).......((((((..((((.(((((((.((.(.((.(((((((((((.(((((.(((((.(.((((((.((((.(((((((((.(((.(((((((((.(...(((.((((..(((((...(((((((((((((((.((((((((..(.....(((((((((((((((((.........(((((..(((...((((.(.(.(((.((((...(((((((.(.(((((((((..............))))))))).).)))))))...)))).))).).)..))))..)))..)))))))))))))))).))))))..))))))))).)))))))))))))))...)))))..)))).)))...).))))))))).))).))))))))).)))).)))))).).))))).))))).))))))))))).)).).)).))))))).))))..))))))

Structure

gcgagcuaucgaaggaga      gu    u       A  A A  C           u     c     g c      c    u         u   c         a cuu   c    ca     cua               g        au gacug      -           guaguccgc     uc   cac    -g g c   c    acc       a c         cacaag 
                  gaacca  ggcg auugAAC GA C UG CAUUGGUGgag aagua gucaa g acgaaa agaa uaauuuuga uaa guuuuauua c   caa ucug  uuggc   uggcaguuccucaag ucacaucg  g     ggggcg ugauacaaggc         ugguu  ugc   cguu  g a ucu ccca   uauucuc g ugcaacauu      u
                  ||||||  |||| ||||||| || | || ||||||||||| ||||| ||||| | |||||| |||| ||||||||| ||| ||||||||| |   ||| ||||  |||||   ||||||||||||||| ||||||||  |     |||||| |||||||||||         |||||  |||   ||||  | | ||| ||||   ||||||| | |||||||||       
                  cuuggu  ucgu uaacuug cu g ac guaaccgccuc uucau caguu u uguuuu ucuu auuaaagcu auu caaaaugau g   guu agac  aaccg   accgucaagggguuu aguguggu  c     ccccgc acuauguuucg         accaa  acg   gcga  c u aga gggu   auaagag c acguuguaa      u
------------------      ag    u       a  c c  a           c     a     g u      a    c         u   a         c uac   c    cg     uac               g        -- ---aa      g           ---------     ca   -cu    aa g c   a    aaa       c u         cauuua 

Annotation confidence Not enough data

Genome context

Unknown

Mature pde-miR952c

• Accession: MIMAT0025346
• Description: Pinus densata pde-miR952c mature miRNA
• Sequence: 36 - AACAGAACAUGCCAUUGGUG - 55
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22480283
   Transcriptome-wide identification and characterization of miRNAs from Pinus densata
   Wan LC, Zhang H, Lu S, Zhang L, Qiu Z, Zhao Y, Zeng QY, Lin J
   BMC Genomics (2012) 13:132