Stem-loop pde-MIR952a

Accession

MI0022108

Description

Pinus densata pde-MIR952a precursor miRNA

Gene family

MIPF0000426; MIR952

Literature search

1 open access papers mention pde-MIR952a
(2 sentences)

Sequence

gcgagcuaucgaaggagagaaccaguggcguauugAACAGAGCAUGCCAUUGGUGgaguaaguacgucaaggcacgaaacagaauuaauuuugauuaacguuuuauuaaccuucaacucugcauuggccuauggcaguuccucaaggucacaucgauggacaacucugcauuggccuauggcaguuccucaaggucacaucgauggacuggggcgugauacaaggcguaguccgcugguuucugccaccguuaggacucuccccaaccuauucucagcugcaacauuuacaacugcaacauucacaaguuauuuacaauguugcagccgagaauaaaaugggaagacuccaaagcgucgcaacaaccagcuuuguaucagccccccaacuggugugaguuuggggaacugccacaugccaagccagacuugcaugcuaauaaaacauuauucgaaauugcuucuauuuuguuuguugacauacuuccuccgccaaugacacgcucaguucaauuugcugaugguuc
.(((....))).......((((((..((((.(((((((.((((.((.(((((((((((.(((((.(((((.(.((((((.((((.(((((((((.(((.(((((((((.(...(((.((((..(((((...(((((((((((((((.((((((((((((((............(((...)))...........))).))))..(((...(((((.(((((((((((.........(((((..(((.((..((.(((.(((.((((...(((((((.(((((((((((((.((((............))))...)).))))))))))).)))))))...)))).))).))).))..)).)))..))))))))))))))))))))))))...))))))).)))))))))))))))...)))))..)))).)))...).))))))))).))).))))))))).)))).)))))).).))))).))))).))))))))))).)).)))).))))))).))))..))))))

Structure

gcgagcuaucgaaggaga      gu    u       A    A  C           u     c     g c      c    u         u   c         a cuu   c    ca     cua               g       gauggacaacucugcauuggccuauggcaguuccucaaggucacaucga   acu     g           guaguccgc     uc   c  cg  a   c   c    acc       a           -  --c    gcaac 
                  gaacca  ggcg auugAAC GAGC UG CAUUGGUGgag aagua gucaa g acgaaa agaa uaauuuuga uaa guuuuauua c   caa ucug  uuggc   uggcaguuccucaag ucacauc                                                 ugg   ggggc ugauacaaggc         ugguu  ugc ac  uu gga ucu ccca   uauucuc gcugcaacauu ua   aacu     a
                  ||||||  |||| ||||||| |||| || ||||||||||| ||||| ||||| | |||||| |||| ||||||||| ||| ||||||||| |   ||| ||||  |||||   ||||||||||||||| |||||||                                                 |||   ||||| |||||||||||         |||||  ||| ||  || ||| ||| ||||   ||||||| ||||||||||| ||   ||||      
                  cuuggu  ucgu uaacuug cucg ac guaaccgccuc uucau caguu u uguuuu ucuu guuaaagcu auu caaaauaau g   guu agac  aaccg   accgucaagggguuu agugugg                                                 acc   ccccg acuauguuucg         accaa  acg ug  aa ccu aga gggu   auaagag cgacguuguaa au   uuga     u
------------------      ag    u       a    c  a           c     a     g u      a    c         u   a         c uac   c    cg     uac               g       ----------------------------------------------uca   ---     -           ---------     ca   c  cg  a   c   a    aaa       c           c  uua    acacu 

Annotation confidence Not enough data

Genome context

Unknown

Mature pde-miR952a

• Accession: MIMAT0025344
• Description: Pinus densata pde-miR952a mature miRNA
• Sequence: 36 - AACAGAGCAUGCCAUUGGUG - 55
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22480283
   Transcriptome-wide identification and characterization of miRNAs from Pinus densata
   Wan LC, Zhang H, Lu S, Zhang L, Qiu Z, Zhao Y, Zeng QY, Lin J
   BMC Genomics (2012) 13:132