miRBase entry: pde-MIR947

Stem-loop pde-MIR947


Accession
MI0022103
Description
Pinus densata pde-MIR947 precursor miRNA

Literature search
1 open access papers mention pde-MIR947
(1 sentences)

Sequence

acgccuaaggcgcagcagcagauucugauagaagacucaggcaaagcauuuguuguuggcagguugaaugcuuucggcagaaccaccaauaacaagggggggcgccuggugucuugCAUCGGAAUCUGUUACUGUUUCcuaggcgu
(((((((.((.((((.(((((((((((((..(((((((((((......(((((((((((..((((...((((...)))).)))).))))))))))).......)))))).)))))..))))))))))))).))))..)))))))))

Structure
       a  -c    c             ag     -      -aaagca           ca    gaa    u 
acgccua gg  gcag agcagauucugau  aagac ucaggc       uuuguuguugg  gguu   ugcu  
||||||| ||  |||| |||||||||||||  ||||| ||||||       |||||||||||  ||||   |||| u
ugcggau cC  UGUC UUGUCUAAGGCUA  uucug gguccg       gaacaauaacc  ccaa   acgg  
       -  UU    A             Cg     u      cgggggg           -a    --g    c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature pde-miR947

Accession MIMAT0025339
Description Pinus densata pde-miR947 mature miRNA
Sequence 117 - CAUCGGAAUCUGUUACUGUUUC - 138
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22480283
    Transcriptome-wide identification and characterization of miRNAs from Pinus densata
    Wan LC, Zhang H, Lu S, Zhang L, Qiu Z, Zhao Y, Zeng QY, Lin J
    BMC Genomics (2012) 13:132