miRBase entry: mja-mir-6492

Stem-loop mja-mir-6492


Accession
MI0022069
Description
Marsupenaeus japonicus mja-mir-6492 precursor miRNA


Sequence

aguagcaaaugcucgagcaagccgaacccucGUUGACCGAAGCGGAGGAGgguuccccgccaacaucgcuuggucguggauaagucggcccuuagcccgaggauagcuucc
...(((..((.((((.((..(((((....((..(((((.((((((.((.(((...))).))....)))))))))))..))....))))).....)).)))).)).)))...

Structure
agu   aa  g    a  ---aa     accc  GU     G      ---A  A   u 
   agc  au cucg gc     gccga    uc  UGACC AAGCGG    GG Ggg  
   |||  || |||| ||     |||||    ||  ||||| ||||||    || ||| u
   ucg  ua gagc cg     cggcu    ag  gcugg uucgcu    cc ccc  
ccu   -a  g    c  auucc     gaau  gu     -      acaa  g   c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature mja-miR-6492

Accession MIMAT0025300
Description Marsupenaeus japonicus mja-miR-6492 mature miRNA
Sequence 32 - GUUGACCGAAGCGGAGGAG - 50
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22545795
    Characterization of host microRNAs that respond to DNA virus infection in a crustacean
    Huang T, Xu D, Zhang X
    BMC Genomics (2012) 13:159