Stem-loop sequence ptc-MIR482b

Accession

MI0022043 (change log)

Description

Populus trichocarpa miR482b stem-loop

Gene family

MIPF0000403; MIR482

Literature search

7 open access papers mention ptc-MIR482b
(125 sentences)

Stem-loop

        -   cc          --    agaccua        ug g         u  -    c      -------au   u 
5' gagaa gag  ggagggggag  acug       cuggaagu  u ggcaugagg gu uugg aagaaa         gga c
   ||||| |||  ||||||||||  ||||       ||||||||  | ||||||||| || |||| ||||||         ||| u
3' cucuu cuu  ccuuucccuc  ugac       gaccuuua  a ccguacucu ca aacc uucuuu         ccu u
        u   -c          cu    -------        gu a         c  u    a      aguaguauu   u 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Poptr2_0; GCA_000002775.2): CM000341.2: 11901546-11901695 [-]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS00007A7829_3694
• miRBase Tracker:MI0022043

Mature sequence ptc-miR482b-5p

• Accession: MIMAT0027338
• Sequence: 44 - ggcaugagguguuuggcaaga - 64
• Evidence: experimental; Illumina [2]

Mature sequence ptc-miR482b-3p

• Accession: MIMAT0025271
• Sequence: 93 - uuaccaauaccucucaugccaa - 114
• Evidence: experimental; miRNAseq [1], Illumina [2]

References

1. PMID:22442676 "Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets" Puzey JR, Karger A, Axtell M, Kramer EM PLoS One. 7:e33034(2012).
2. PMID:23570526 "Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis" Shuai P, Liang D, Zhang Z, Yin W, Xia X BMC Genomics. 14:233(2013).