Stem-loop ptc-MIR156l

Accession

MI0022040

Description

Populus trichocarpa ptc-MIR156l precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

8 open access papers mention ptc-MIR156l
(77 sentences)

Sequence

gUUGACAGAAGAUGGAGAGCACagcuacauguaaucgagaauuaguccuguagaagugcaguuugugcuuuguguuuucuuuucuucuuuaaac
(((...((((((.((((((((((.(((((..((((.....))))....)))))(((((((...)))))))))))))))))..))))))...)))

Structure

   GAC      -U          ----------------g     --ug    c 
gUU   AGAAGA  GGAGAGCACa                 cuaca    uaau g
|||   ||||||  ||||||||||                 |||||    |||| a
caa   ucuucu  ucuuuugugu                 gaugu    auua g
   auu      uu          uucguguuugacgugaa     ccug    a 

Annotation confidence Not enough data

Genome context

CM000337.2: 34445840-34445933 [-]

Mature ptc-miR156l

• Accession: MIMAT0025268
• Description: Populus trichocarpa ptc-miR156l mature miRNA
• Sequence: 2 - UUGACAGAAGAUGGAGAGCAC - 22
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034