miRBase entry: ptc-MIR6454

Stem-loop ptc-MIR6454


Accession
MI0022036
Description
Populus trichocarpa ptc-MIR6454 precursor miRNA


Sequence

uagcuggguaacguggaCUUGUAACCUGAGUAGAGGCAauaaagugauauaacauuggcucgcucagcuuagaaggucggguccaguua
(((((((...((.((..(((.(((.((((((.(((.((((...((......)))))).))))))))).))).)))..)).)))))))))

Structure
       gua  g  ga   G   C      A   G    aaa  ga 
uagcugg   ac ug  CUU UAA CUGAGU GAG CAau   gu  u
|||||||   || ||  ||| ||| |||||| ||| ||||   ||   
auugacc   ug gc  gaa auu gacucg cuc guua   ca  a
       ---  g  ug   g   c      -   g    ---  au 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ptc-miR6454

Accession MIMAT0025264
Description Populus trichocarpa ptc-miR6454 mature miRNA
Sequence 18 - CUUGUAACCUGAGUAGAGGCA - 38
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034