miRBase entry: ptc-MIR3627a

Stem-loop ptc-MIR3627a


Accession
MI0022035
Description
Populus trichocarpa ptc-MIR3627a precursor miRNA

Literature search
1 open access papers mention ptc-MIR3627a
(3 sentences)

Sequence

gguuuggggaggggaguUCUGUCGCUGGAAAGAUGGUACcuagggcugcauauuaauguguauagcaagcaauaggcaccaucuucccgcgacggaacuccccucuaaccucuacc
(((..((((((((((((((((((((.((((.((((((.((((..(((((((((......)))).)).)))..)))).)))))))))).)))))))))))))))))...)))..)))

Structure
   uu   ---                 U    A      A    gg   -  -    ua 
ggu  ggg   gaggggaguUCUGUCGC GGAA GAUGGU Ccua  gcu gc auau  a
|||  |||   ||||||||||||||||| |||| |||||| ||||  ||| || ||||   
cca  ucc   cuccccucaaggcagcg ccuu cuacca ggau  cga cg uaug  u
   uc   aau                 c    -      c    aa   a  a    ug 


Annotation confidence Not enough data
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Genome context
CM000353.2: 10902822-10902937 [+]

Database links

Mature ptc-miR3627a

Accession MIMAT0025263
Description Populus trichocarpa ptc-miR3627a mature miRNA
Sequence 18 - UCUGUCGCUGGAAAGAUGGUAC - 39
Evidence experimental
miRNAseq [1], Illumina [2]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034

  2. PubMed ID: 23570526
    Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
    Shuai P, Liang D, Zhang Z, Yin W, Xia X
    BMC Genomics (2013) 14:233