miRBase entry: ptc-MIR6439b

Stem-loop ptc-MIR6439b


Accession
MI0022030
Description
Populus trichocarpa ptc-MIR6439b precursor miRNA
Gene family
MIPF0001526; MIR6439


Sequence

aaugcugaguaagaagccaaauaaagaAGCAGAAGCCAUCACUAGCGCcgcccuaauuaaaugcucaacccgucauuuugaucgcaacgaguuuucaucugcauaugggaagauuuucauggagaagaaugcuguagcauucaguuaagucugauugcaaaccucgugauguauugagcauuuacuuaauaugcugauggugacuucugccucuugauuuggugccugaaucaacauu
((((.(((...((..(((((((.((((.(((((((.(((((.(((((......(((.(((((((((((..((((((..........((.(((.(((.(((.((..(((((....))))))).))).))).))))).(((.((((......)))).))).......))))))..))))))))))).)))...))))).))))).))))))).)))).)))))))..))...))).))))

Structure
    c   gua  aa       a    A       C     C     Ccgccc   u           cc      --------------------uuugaucgca  g   u   a   g  ua     a 
aaug uga   ag  gccaaau aaga GCAGAAG CAUCA UAGCG      uaa uaaaugcucaa  cgucau                              ac agu uuc ucu ca  uggga g
|||| |||   ||  ||||||| |||| ||||||| ||||| |||||      ||| |||||||||||  ||||||                              || ||| ||| ||| ||  |||||  
uuac acu   uc  ugguuua uucu cgucuuc guggu gucgu      auu auuuacgaguu  guagug                              ug ucg aag aga gu  acuuu a
    a   aag  cg       g    c       a     a     ---aua   c           au      cuccaaacguuagucugaauugacuuacga  -   u   a   g  --     u 


Annotation confidence Not enough data
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Genome context
CM000352.2: 71120-71357 [-]

Database links

Mature ptc-miR6439b

Accession MIMAT0025258
Description Populus trichocarpa ptc-miR6439b mature miRNA
Sequence 28 - AGCAGAAGCCAUCACUAGCGC - 48
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034