Stem-loop sequence ptc-MIR477c

AccessionMI0022029 (change log)
DescriptionPopulus trichocarpa miR477c stem-loop
Gene family MIPF0000216; MIR477
Literature search

1 open access papers mention ptc-MIR477c
(1 sentences)

Stem-loop 
       uu    -      - c       u    -            ca aua     u 
5' augg  ggag aagcuc c aacuccc caaa gguuuccagcau  c   auugc u
   ||||  |||| |||||| | ||||||| |||| ||||||||||||  |   ||||| c
3' uacc  ccuc uucgag g uuggggg guuu ccaaagguugua  g   uaaug a
       --    a      a u       u    u            ag --g     a
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000351.2: 12329499-12329608 [-]
intergenic
Clustered miRNAs
< 10kb from ptc-MIR477c
ptc-MIR477cCM000351.2: 12329499-12329608 [-]
ptc-MIR1446dCM000351.2: 12329283-12329387 [-]
Database links

Mature sequence ptc-miR477c

Accession MIMAT0025257
Sequence

73 -  

ggaaaccuuuuguggggguuug

 - 94

Get sequence
Evidence experimental; miRNAseq [1], Illumina [2]

References

1
PMID:22442676 "Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets" Puzey JR, Karger A, Axtell M, Kramer EM PLoS One. 7:e33034(2012).
2
PMID:23570526 "Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis" Shuai P, Liang D, Zhang Z, Yin W, Xia X BMC Genomics. 14:233(2013).