miRBase entry: ptc-MIR6450a

Stem-loop ptc-MIR6450a


Accession
MI0022026
Description
Populus trichocarpa ptc-MIR6450a precursor miRNA
Gene family
MIPF0001528; MIR6450


Sequence

aauaaugagucuugcaucaagacccaguucucuuggguccugcaacaggaucuagugcucuuggguccacgucaggacccaauuuucuuggguuCUUUGUCAGGACUCAAGGCUAuuggguuuuagguuuuuaaauauaauuauu
...............(((((((((((((..(((((((((((((((.(((((((((.....((((((((......)))))))).....)))))))))))).))))))))))))..)))))))))).))).................

Structure
--aauaaugagucuugc   -          uc            -   c         ugcuc        ac 
                 auc aagacccagu  ucuuggguccug caa aggaucuag     uugggucc  g
                 ||| ||||||||||  |||||||||||| ||| |||||||||     ||||||||   
                 ugg uuuuggguuA  GGAACUCAGGAC GUU UCuuggguu     aacccagg  u
uuauuaauauaaauuuu   a          UC            U   -         cuuuu        ac 


Annotation confidence Not enough data
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Genome context
CM000351.2: 2848979-2849123 [+]

Database links

Mature ptc-miR6450a

Accession MIMAT0025254
Description Populus trichocarpa ptc-miR6450a mature miRNA
Sequence 95 - CUUUGUCAGGACUCAAGGCUA - 115
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034