miRBase entry: ptc-MIR6448

Stem-loop ptc-MIR6448


Accession
MI0022023
Description
Populus trichocarpa ptc-MIR6448 precursor miRNA


Sequence

uucuagagguaauuaacaucuaacaucugcagacuacuugccuuguuacugccgugccuauuuugaauauauauauucaaaaUAGGCACAGAAUUAACAAGGCaaguauucaguagauguuagauaggaugagcuaaggcuggag
.(((((((.(.(((...(((((((((((((.((.((((((((((((((...(.((((((((((((((((....)))))))))))))))).)...)))))))))))))).)).)))))))))))))..))).).))....))))).

Structure
u     ----  g a   aac             a  c              cug c                u 
 ucuag    ag u auu   aucuaacaucugc ga uacuugccuuguua   c gugccuauuuugaaua a
 |||||    || | |||   ||||||||||||| || ||||||||||||||   | ||||||||||||||||  
 agguc    uc a uag   uagauuguagaug cu augaaCGGAACAAU   G CACGGAUaaaacuuau u
g     ggaa  g g   -ga             a  u              UAA A                a 


Annotation confidence Not enough data
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Genome context
CM000350.2: 7160320-7160464 [+]

Database links

Mature ptc-miR6448

Accession MIMAT0025251
Description Populus trichocarpa ptc-miR6448 mature miRNA
Sequence 83 - UAGGCACAGAAUUAACAAGGC - 103
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034