Stem-loop ptc-MIR6446

Accession

MI0022021

Description

Populus trichocarpa ptc-MIR6446 precursor miRNA

Sequence

cgcuuucuuccuuuaaaaaauaucaguuccaucaugagggcucaguaaacaacauaauuaacauccuaccaaggagcaagaaggcuauuaggaggucaauuccuuuaccuagcggaaguguuguuuugacaugaguggcauuuaucucgauagucuuggauagaauuaugcugcUUGCUGGGUCCUGAUGAUGGAacuagcauuuuuuaagggaagaaaacg
((.((((((((((((((((((...(((((((((((.(((((((((((((((((((........((((....))))........((((...(((((......)))))...))))....)))))))))......((((((((((((((.(((.....)))))))))....)))))))))))))))))).)))))))))))...)))))))))))))))))).))

Structure

  c                  auc           g          aaacaacauaauuaacauccuaccaaggagcaagaaggcuauuaggaggucaauuccuuuaccuagcggaaguguuguuuugacau        ----      u   u 
cg uuucuuccuuuaaaaaau   aguuccaucau agggcucagu                                                                                      gaguggca    uuuauc cga a
|| ||||||||||||||||||   ||||||||||| ||||||||||                                                                                      ||||||||    |||||| ||| g
gc aaagaagggaauuuuuua   ucaAGGUAGUA UCCUGGGUCG                                                                                      UUcgucgu    agauag guu u
  a                  cga           G          --------------------------------------------------------------------------------------        auua      -   c 

Annotation confidence Not enough data

Genome context

CM000348.2: 13985267-13985488 [-]

Mature ptc-miR6446

• Accession: MIMAT0025249
• Description: Populus trichocarpa ptc-miR6446 mature miRNA
• Sequence: 175 - UUGCUGGGUCCUGAUGAUGGA - 195
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034