miRBase entry: ptc-MIR6441

Stem-loop ptc-MIR6441


Accession
MI0022016
Description
Populus trichocarpa ptc-MIR6441 precursor miRNA


Sequence

cagcaauguaguccuuccgucaacuuugagauacguguuacacuucugcaugucacgugaccacgcugucaAAGUUGACGGAAGGACUACAUugcug
(((((((((((((((((((((((((((((.(..((((((((((........))...)))).)))).).)))))))))))))))))))))))))))))

Structure
                             g ua    -    ---  uuc 
cagcaauguaguccuuccgucaacuuuga a  cgug uuac   ac   u
||||||||||||||||||||||||||||| |  |||| ||||   ||    
gucguUACAUCAGGAAGGCAGUUGAAacu u  gcac agug   ug   g
                             g -c    c    cac  uac 


Annotation confidence Not enough data
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Genome context
CM000347.2: 18360529-18360625 [-]

Database links

Mature ptc-miR6441

Accession MIMAT0025244
Description Populus trichocarpa ptc-miR6441 mature miRNA
Sequence 72 - AAGUUGACGGAAGGACUACAU - 92
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034