miRBase entry: ptc-MIR6440a

Stem-loop ptc-MIR6440a


Accession
MI0022015
Description
Populus trichocarpa ptc-MIR6440a precursor miRNA
Gene family
MIPF0001406; MIR6440


Sequence

cgaguuaaaacucgaaaucaaucaaacucggucaaacucguaaaaucgaucuaauuuuaccgauuuuaacugaguuugaccGAGUUUGAUCGAUUUCGAGUUuuaaccug
...((((((((((((((((.((((((((((((((((((((((((((((............))))))))..)))))))))))))))))))).))))))))))))))))...

Structure
cga                a                    --        aucua 
   guuaaaacucgaaauc aucaaacucggucaaacucg  uaaaaucg     a
   |||||||||||||||| ||||||||||||||||||||  ||||||||      
   caauuUUGAGCUUUAG UAGUUUGAGccaguuugagu  auuuuagc     u
guc                C                    ca        cauuu 


Annotation confidence Not enough data
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Genome context
CM000347.2: 1785258-1785367 [+]

Database links

Mature ptc-miR6440a

Accession MIMAT0025243
Description Populus trichocarpa ptc-miR6440a mature miRNA
Sequence 82 - GAGUUUGAUCGAUUUCGAGUU - 102
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034