miRBase entry: ptc-MIR482d

Stem-loop ptc-MIR482d


Accession
MI0022007
Description
Populus trichocarpa ptc-MIR482d precursor miRNA
Gene family
MIPF0000403; MIR482

Literature search
7 open access papers mention ptc-MIR482d
(130 sentences)

Sequence

agagaagaggggaaagagauggaggacgaggaaguuucuGGACAUGGGUUGGUUUGCAAGAaaauaagauuuuugaacucucugauauuguucauggaaaacaguuuucUUGCCGACCCCACCCAUGCCAAugauuuccucagcuuccucucucucccuguuuccuucucu
(((((((.(((((.(((((.(((((..(((((((((..(((.(((((((.((((.((((((((((....(((((((((...........))))).))))....)))))))))).))))..))))))))))..)))))))))..)))))))))).))))).....)))))))

Structure
       ----a     a     u     ac         uc   A       -U    U          aaga    -     ucuc 
agagaag     gggga agaga ggagg  gaggaaguu  uGG CAUGGGU  GGUU GCAAGAaaau    uuuu ugaac    u
|||||||     ||||| ||||| |||||  |||||||||  ||| |||||||  |||| ||||||||||    |||| |||||    g
ucucuuc     ucccu ucucu ccuuc  cuccuuuag  ACC GUACCCA  CCAG CGUUcuuuug    aagg acuug    a
       cuuug     c     -     ga         uA   -       CC    C          acaa    u     uuau 


Annotation confidence Not enough data
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Genome context
CM000346.2: 12814668-12814838 [-]

Database links

Mature ptc-miR482d-5p

Accession MIMAT0025234
Description Populus trichocarpa ptc-miR482d-5p mature miRNA
Sequence 40 - GGACAUGGGUUGGUUUGCAAGA - 61
Evidence experimental
miRNAseq [1], Illumina [2]

Mature ptc-miR482d-3p

Accession MIMAT0025235
Description Populus trichocarpa ptc-miR482d-3p mature miRNA
Sequence 110 - UUGCCGACCCCACCCAUGCCAA - 131
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034

  2. PubMed ID: 23570526
    Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
    Shuai P, Liang D, Zhang Z, Yin W, Xia X
    BMC Genomics (2013) 14:233