miRBase entry: ptc-MIR6430

Stem-loop ptc-MIR6430


Accession
MI0022004
Description
Populus trichocarpa ptc-MIR6430 precursor miRNA


Sequence

ccaaucuuagcuucuuguuguuuagcuUGAUGAUUAAUUGACUGCAAAagcaacucucuucuuuuuuuaggagaggaguugccuuugcagucaaguaaucaucaagcuaaauaccauaacugaggacugagguagaagg
...(((((((((((((((((((((((((((((((((.(((((((((((.(((((((((((((......)))))).))))))).))))))))))).))))))))))))))))))..))))..)))).)))))))......

Structure
---cca       -    --    --                  A           a       -      uu 
      aucuuag cuuc  uugu  uguuuagcuUGAUGAUUA UUGACUGCAAA gcaacuc ucuucu  u
      ||||||| ||||  ||||  |||||||||||||||||| ||||||||||| ||||||| ||||||   
      uggaguc ggag  aaua  auaaaucgaacuacuaau aacugacguuu cguugag agagga  u
ggaaga       a    uc    cc                  g           c       g      uu 


Annotation confidence Not enough data
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Genome context
CM000337.2: 34025493-34025631 [+]

Database links

Mature ptc-miR6430

Accession MIMAT0025231
Description Populus trichocarpa ptc-miR6430 mature miRNA
Sequence 28 - UGAUGAUUAAUUGACUGCAAA - 48
Evidence experimental
miRNAseq [1], Illumina [2]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034

  2. PubMed ID: 23570526
    Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
    Shuai P, Liang D, Zhang Z, Yin W, Xia X
    BMC Genomics (2013) 14:233