Stem-loop ptc-MIR6462d

Accession

MI0021998

Description

Populus trichocarpa ptc-MIR6462d precursor miRNA

Gene family

MIPF0001393; MIR6462

Literature search

1 open access papers mention ptc-MIR6462d
(2 sentences)

Sequence

auggaugggaucagcgaggggcaaaaauggcauaagagagauguacaaggguguggaaggggaagagaaagaucgauaucuacuacccuacuuuuUCUCUUAUGCAUUUUUGUCCCucgccagucucgcccau
((((.((((((..((((((((((((((((.(((((((((((.((...((((((((((....((.........))....))))).)))))))..)))))))))))))))))))))))))))..)))))).))))

Structure

    a      ca                g           -u  aca     -     aggg  aga 
augg ugggau  gcgaggggcaaaaaug cauaagagaga  gu   agggu gugga    ga   g
|||| ||||||  |||||||||||||||| |||||||||||  ||   ||||| |||||    ||   a
uacc gcucug  cgcuCCCUGUUUUUAC GUAUUCUCUuu  ca   uccca caucu    cu   a
    c      ac                -           uu  ---     u     auag  aga 

Annotation confidence Not enough data

Genome context

CM000341.2: 24265932-24266064 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from ptc-MIR6462d

Mature ptc-miR6462d

• Accession: MIMAT0025224
• Description: Populus trichocarpa ptc-miR6462d mature miRNA
• Sequence: 96 - UCUCUUAUGCAUUUUUGUCCC - 116
• Evidence: experimental ; miRNAseq [1], Illumina [2]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034


2. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233