miRBase entry: ptc-MIR6477

Stem-loop ptc-MIR6477


Accession
MI0021992
Description
Populus trichocarpa ptc-MIR6477 precursor miRNA


Sequence

cccuuucuucuucuucguugucuacugagUGAACAGUAGACGUGAAUUAUaguuaacguccuacuauucacacaugggcgugaauuauaauucacguucacuguucaugcagugaauauuggg
..............(((.(((.(((((.(((((((((.((((((((((((((((.((((((..............)))))).)))))))))))))))).))))))))).))))).))).))).

Structure
cccuuucuucuucu   u   c     a         A                a      uacuau 
              ucg ugu uacug gUGAACAGU GACGUGAAUUAUaguu acgucc      u
              ||| ||| ||||| ||||||||| |||||||||||||||| ||||||       
              ggu aua gugac uacuuguca uugcacuuaauauuaa ugcggg      c
-------------g   u   a     g         c                g      uacaca 


Annotation confidence Not enough data
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Genome context
CM000344.2: 15318202-15318324 [+]

Database links

Mature ptc-miR6477

Accession MIMAT0025218
Description Populus trichocarpa ptc-miR6477 mature miRNA
Sequence 30 - UGAACAGUAGACGUGAAUUAU - 50
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034