miRBase entry: ptc-MIR6471

Stem-loop ptc-MIR6471


Accession
MI0021985
Description
Populus trichocarpa ptc-MIR6471 precursor miRNA


Sequence

aucuuuuagcauuuuccaagcaaauugaauuuguaucUUUGGGAUCAUCAGGACAGCCccugcaucgagaauuaugcagaacucuacugaaaugaaacggggaaaaaaaaauuauuucaaccuuugccacaacugacgcaggggcugccccgauaauuccaaagauccagugcaaucugcuuguuaaauugcuacuggau
((((..((((((((..((((((.((((...(((.(((((((((((.(((.((.((((((((((.((.((......(((((.......((((((((................))))))))...))))).....)))).)))))))))).)).))).))))))))))).)))..)))).))))))..))).)))))..))))

Structure
    uu     -   uc      a    aau   u           C   A  A          a  g  aauuau     acucuac        aacgggg 
aucu  uagca uuu  caagca auug   uug aucUUUGGGAU AUC GG CAGCCccugc uc ag      gcaga       ugaaauga       a
||||  ||||| |||  |||||| ||||   ||| ||||||||||| ||| || |||||||||| || ||      |||||       ||||||||        
uagg  aucgu aaa  guucgu uaac   gac uagaaaccuua uag cc gucggggacg ag uc      cguuu       acuuuauu       a
    uc     u   uu      c    -gu   c           a   c  c          c  -  -aacac     ----cca        aaaaaaa 


Annotation confidence Not enough data
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Genome context
CM000342.2: 21307769-21307968 [+]

Database links

Mature ptc-miR6471

Accession MIMAT0025210
Description Populus trichocarpa ptc-miR6471 mature miRNA
Sequence 38 - UUUGGGAUCAUCAGGACAGCC - 58
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034