miRBase entry: ptc-MIR6470

Stem-loop ptc-MIR6470


Accession
MI0021984
Description
Populus trichocarpa ptc-MIR6470 precursor miRNA


Sequence

uucaugauuguuugguuauugaagCUCUGAUAUCAUAUUAAAAAAuuaucuugaucuaaaaucaauuaagcuuuuaaguuuuuaaguugagaugguuuuuugacaugauaucagaguuuguugaccaaguaauuagaa
.((.((((((((((((((...(((((((((((((((.((((((((((((((((((.(((((....((((....))))..))))).)))))))))))))))))).)))))))))))))))..)))))))))))))))).

Structure
u  a              uug               A                  c     ucaa    g 
 uc ugauuguuugguua   aagCUCUGAUAUCAU UUAAAAAAuuaucuugau uaaaa    uuaa c
 || ||||||||||||||   ||||||||||||||| |||||||||||||||||| |||||    ||||  
 ag auuaaugaaccagu   uuugagacuauagua aguuuuuugguagaguug auuuu    aauu u
a  -              -ug               c                  a     --ug    u 


Annotation confidence Not enough data
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Genome context
CM000342.2: 19553190-19553327 [-]

Database links

Mature ptc-miR6470

Accession MIMAT0025209
Description Populus trichocarpa ptc-miR6470 mature miRNA
Sequence 25 - CUCUGAUAUCAUAUUAAAAAA - 45
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034