miRBase entry: ptc-MIR6462c

Stem-loop ptc-MIR6462c


Accession
MI0021982
Description
Populus trichocarpa ptc-MIR6462c precursor miRNA
Gene family
MIPF0001393; MIR6462

Literature search
1 open access papers mention ptc-MIR6462c
(2 sentences)

Sequence

auggaugcgaccggcAAGGGACAAAAAUGGCAUAAGAgagauguacagggguagggaaggggaagagaaagaucgauaucuacgccccuucuuuuUCUCUUAUGCAUUUUUGUCCCucgccagucucgcccau
((((.((.(((.(((.(((((((((((((.(((((((((((............(((((((((...(((.(......).)))...))))))))))))))))))))))))))))))))).))).))).)).))))

Structure
    a  c   c   A             G           uguacaggggua         aag   a ga 
augg ug gac ggc AGGGACAAAAAUG CAUAAGAgaga            gggaagggg   aga a  u
|||| || ||| ||| ||||||||||||| |||||||||||            |||||||||   ||| |   
uacc gc cug ccg uCCCUGUUUUUAC GUAUUCUCUuu            uucuucccc   ucu u  c
    c  u   a   c             -           ------------         gca   a ag 


Annotation confidence Not enough data
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Genome context
CM000341.2: 24280110-24280242 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ptc-MIR6462c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptc-miR6462c-5p

Accession MIMAT0025205
Description Populus trichocarpa ptc-miR6462c-5p mature miRNA
Sequence 16 - AAGGGACAAAAAUGGCAUAAGA - 37
Evidence experimental
miRNAseq [1], Illumina [2]

Mature ptc-miR6462c-3p

Accession MIMAT0025206
Description Populus trichocarpa ptc-miR6462c-3p mature miRNA
Sequence 96 - UCUCUUAUGCAUUUUUGUCCC - 116
Evidence experimental
miRNAseq [1], Illumina [2]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034

  2. PubMed ID: 23570526
    Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
    Shuai P, Liang D, Zhang Z, Yin W, Xia X
    BMC Genomics (2013) 14:233