miRBase entry: ptc-MIR6466

Stem-loop ptc-MIR6466


Accession
MI0021973
Description
Populus trichocarpa ptc-MIR6466 precursor miRNA


Sequence

ggugcauauauauacaugaaugugccucaugUCUGGUAUGAGCAUUUGAUGAuugauaauuucaauuuguuuacaucuuuuuucugcaauccuaauaccgcguacuuucaaauguaaagaaauugaaauUAUCAAUCAUCAAAUGUUCGUaccauacguaaggcacacucguauguauaauuguauu
.(((((..((((((.((((.(((((((.((((.(((((((((((((((((((((((((((((((((((.(((((((........(((............))).........))))))).))))))))))))))))))))))))))))))))))).)))).))))))).)))).))))))..))))).

Structure
g     ua      c    a       c    C                                   g       -cuuuuuuc   aaucc 
 gugca  uauaua auga ugugccu augU UGGUAUGAGCAUUUGAUGAuugauaauuucaauuu uuuacau         ugc     u
 |||||  |||||| |||| ||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||         |||      
 uaugu  auaugu ugcu acacgga ugca accaUGCUUGUAAACUACUAACUAUuaaaguuaaa aaaugua         gcg     a
u     ua      a    c       a    u                                   g       aacuuucau   ccaua 


Annotation confidence Not enough data
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Genome context
CM000340.2: 11447532-11447718 [+]

Database links

Mature ptc-miR6466-5p

Accession MIMAT0025194
Description Populus trichocarpa ptc-miR6466-5p mature miRNA
Sequence 32 - UCUGGUAUGAGCAUUUGAUGA - 52
Evidence experimental
miRNAseq [1]

Mature ptc-miR6466-3p

Accession MIMAT0025195
Description Populus trichocarpa ptc-miR6466-3p mature miRNA
Sequence 130 - UAUCAAUCAUCAAAUGUUCGU - 150
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034