Stem-loop ptc-MIR6462a

Accession

MI0021968

Description

Populus trichocarpa ptc-MIR6462a precursor miRNA

Gene family

MIPF0001393; MIR6462

Literature search

1 open access papers mention ptc-MIR6462a
(2 sentences)

Sequence

auggaugggaucagcaaggggcaaagaugcauaagagagauguacaaggguagggaaggggaagagaaagaucgauaucgacuacccuucuuuuUCUCUUAUGCAUUUUUGUCCCucgcuagucucacccau
((((.((((((.(((.((((((((((((((((((((((((.....((((((((....((....((......))....))..))))))))...)))))))))))))))))))))))).))).)))))).))))

Structure

    a      c   a                        uguac        ggaa  ggaa  ga 
augg ugggau agc aggggcaaagaugcauaagagaga     aaggguag    gg    ga  a
|||| |||||| ||| ||||||||||||||||||||||||     ||||||||    ||    ||   
uacc acucug ucg uCCCUGUUUUUACGUAUUCUCUuu     uucccauc    cu    cu  a
    c      a   c                        --uuc        --ag  auag  ag 

Annotation confidence Not enough data

Genome context

CM000340.2: 2221706-2221837 [+]

Mature ptc-miR6462a

• Accession: MIMAT0025188
• Description: Populus trichocarpa ptc-miR6462a mature miRNA
• Sequence: 95 - UCUCUUAUGCAUUUUUGUCCC - 115
• Evidence: experimental ; miRNAseq [1], Illumina [2]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034


2. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233