Stem-loop sequence mmu-mir-873b

Accession

MI0021959 (change log)

Symbol

MGI:Mir873b

Description

Mus musculus miR-873b stem-loop

Gene family

MIPF0000390; mir-873

Literature search

7 open access papers mention mmu-mir-873b
(38 sentences)

Stem-loop

   uu   g     cc           c          cua 
5'   gug guguu  cgggaacuugu agucuccugu   u
     ||| |||||  ||||||||||| ||||||||||   u
3'   cac cguaa  guccuugaaca ucagaggaua   u
   --   a     ac           c          acu 

Deep sequencing

20 reads, 0 reads per million, 7 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr4: 36668510-36668586 [+]
• Overlapping transcripts:

  antisense

  OTTMUST00000014873 ; Lingo2-001; intron 2

  OTTMUST00000014888 ; Lingo2-005; intron 2

  ENSMUST00000108122 ; Lingo2-001; intron 2

  ENSMUST00000124999 ; Lingo2-005; intron 2

Clustered miRNAs

< 10kb from mmu-mir-873b

• mmu-mir-873b: chr4: 36668510-36668586 [+]
• mmu-mir-873a: chr4: 36668510-36668586 [-]

Database links

• MGI:Mir873b
• miRBase Tracker:MI0021959

Mature sequence mmu-miR-873b

• Accession: MIMAT0025177
• Sequence: 56 - acaaguuccugcaaaugcacac - 77
• Deep sequencing: 9 reads, 5 experiments
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-873b
  • miRDB:mmu-miR-873b

References

1. PMID:22319597 "Complexity of murine cardiomyocyte miRNA biogenesis, sequence variant expression and function" Humphreys DT, Hynes CJ, Patel HR, Wei GH, Cannon L, Fatkin D, Suter CM, Clancy JL, Preiss T PLoS One. 7:e30933(2012).