Stem-loop sequence mmu-mir-6392

Accession

MI0021926 (change log)

Symbol

MGI:Mir6392

Description

Mus musculus miR-6392 stem-loop

Stem-loop

   u     c  accc    u  c   -cu  u    u   --   g   -a      a 
5'  ucuuc ug    gcuc gg gcc   gg ccug cag  cug guc  ucccug g
    ||||| ||    |||| || |||   || |||| |||  ||| |||  |||||| c
3'  ggaag ac    cgag cc ugg   cc gggc guu  gac cag  agggac a
   u     -  --gc    u  c   ucu  u    c   ug   g   ca      g 

Deep sequencing

25 reads, 1.19e+03 reads per million, 15 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr15: 84168270-84168377 [+]
• Overlapping transcripts:

  sense

  ENSMUST00000045289 ; Pnpla3-201; intron 1

Database links

• MGI:Mir6392
• miRBase Tracker:MI0021926

Mature sequence mmu-miR-6392-5p

• Accession: MIMAT0025141
• Sequence: 16 - ucuggcgcccugguccugucagc - 38
• Deep sequencing: 17 reads, 10 experiments
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6392-5p
  • miRDB:mmu-miR-6392-5p

Mature sequence mmu-miR-6392-3p

• Accession: MIMAT0025142
• Sequence: 65 - gacgcagguuugccggguccucu - 87
• Deep sequencing: 5 reads, 2 experiments
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6392-3p
  • miRDB:mmu-miR-6392-3p

References

1. PMID:22319597 "Complexity of murine cardiomyocyte miRNA biogenesis, sequence variant expression and function" Humphreys DT, Hynes CJ, Patel HR, Wei GH, Cannon L, Fatkin D, Suter CM, Clancy JL, Preiss T PLoS One. 7:e30933(2012).