miRBase entry: rno-mir-6326

Stem-loop rno-mir-6326


Accession
MI0021850
Description
Rattus norvegicus rno-mir-6326 precursor miRNA


Sequence

5 reads, 2 reads per million, 5 experiments
cugcccuuugagugcugaaggugcuggaguccuuagcagguugccaagaguugcuagugccucCUGGUCUGUAAAGGGACACAGCAcaagugcauuuaggagccucuugcu
..(((((..((((((.....((((((..((((((.((((...((((.(((..((....))))).))))))))..)))))).))))))....))))))))).))........

Structure
------cu  -   uu      ugaag      ga      -a    guu    a   uu  u 
        gc ccu  gagugc     gugcug  guccuu  gcag   gcca gag  gc a
        || |||  ||||||     ||||||  ||||||  ||||   |||| |||  ||  
        cg gga  uuuacg     cACGAC  CAGGGA  UGUC   UGGU cuc  cg g
ucguucuc  a   --      -ugaa      -A      AA    ---    C   --  u 


Annotation confidence Not enough data
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Genome context
chr10: 62299339-62299449 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from rno-mir-6326
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-6326

Accession MIMAT0025065
Description Rattus norvegicus rno-miR-6326 mature miRNA
Sequence 64 - CUGGUCUGUAAAGGGACACAGCA - 86
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22605339
    Limonoid compounds inhibit sphingomyelin biosynthesis by preventing CERT protein-dependent extraction of ceramides from the endoplasmic reticulum
    "Hullin-Matsuda F, Tomishige N, Sakai S, Ishitsuka R, Ishii K, Makino A, Greimel P, Abe M, Laviad EL, Lagarde M, Vidal H, Saito T, Osada H, Hanada K, Futerman AH, Kobayashi T"
    "J Biol Chem (2012) 287:24397-24411

  2. PubMed ID: 22908386
    MicroRNAs in the pineal gland: miR-483 regulates melatonin synthesis by targeting arylalkylamine N-acetyltransferase
    "Clokie SJ, Lau P, Kim HH, Coon SL, Klein DC"
    "J Biol Chem (2012) 287:25312-25324