Stem-loop rno-mir-1298

Accession

MI0021845

Description

Rattus norvegicus rno-mir-1298 precursor miRNA

Gene family

MIPF0000598; mir-1298

Sequence

109388 reads, 285 reads per million, 225 experiments

ggcaaacugaagaaguguuggagagaugagggguuaagagUUCAUUCGGCUGUCCAGAUGUAuccaaguacccuguuauuuggcaauaaauacaucugggcaacugauugaacuuuucgcuucucuugacucaacugga
.....(((.....)))((((.((..(.(((((((.(((((((((.((((.((((((((((((((((((((......)))))))......))))))))))))).)))).))))))))).))))))).)..))))))....

Structure

ggcaaacugaagaagu    g  ag u       u         U    C             ------       cc 
                guug ag  a gaggggu aagagUUCA UCGG UGUCCAGAUGUAu      ccaagua  c
                |||| ||  | ||||||| ||||||||| |||| |||||||||||||      |||||||   
                caac uc  u cucuucg uuuucaagu aguc acgggucuacaua      gguuuau  u
------------aggu    -  ag u       c         u    a             aauaac       ug 

Annotation confidence Not enough data

Genome context

chrX: 118190212-118190350 [+]

Mature rno-miR-1298

• Accession: MIMAT0025060
• Description: Rattus norvegicus rno-miR-1298 mature miRNA
• Sequence: 41 - UUCAUUCGGCUGUCCAGAUGUA - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22605339
   Limonoid compounds inhibit sphingomyelin biosynthesis by preventing CERT protein-dependent extraction of ceramides from the endoplasmic reticulum
   "Hullin-Matsuda F, Tomishige N, Sakai S, Ishitsuka R, Ishii K, Makino A, Greimel P, Abe M, Laviad EL, Lagarde M, Vidal H, Saito T, Osada H, Hanada K, Futerman AH, Kobayashi T"
   "J Biol Chem (2012) 287:24397-24411


2. PubMed ID: 22908386
   MicroRNAs in the pineal gland: miR-483 regulates melatonin synthesis by targeting arylalkylamine N-acetyltransferase
   "Clokie SJ, Lau P, Kim HH, Coon SL, Klein DC"
   "J Biol Chem (2012) 287:25312-25324