miRBase entry: rno-mir-6317-1

Stem-loop rno-mir-6317-1


Accession
MI0021839
Description
Rattus norvegicus rno-mir-6317-1 precursor miRNA
Gene family
MIPF0002112; mir-6317


Sequence

44 reads, 6 reads per million, 41 experiments
aaagaccucuagucuccugcuugccuucugcugcaGUGAACCUGAGAGAAAGGCUCgagcaauuagguuggggccuuacucacagucucacuggagacaucggguuauucuagguggauucagaagg
.....((((((((((((((...((((..((((.((((((..(((.(((.(((((((.(((......))).))))))).))).)))..)))))).)).))..)))).....)))).))))).)).)))

Structure
aaaga   -  -     -    --cuu    uc  -  g      AC   A   A       g   aa 
     ccu cu agucu ccug     gccu  ug cu caGUGA  CUG GAG AAGGCUC agc  u
     ||| || ||||| ||||     ||||  || || ||||||  ||| ||| ||||||| |||   
     gga ga uuagg ggau     uggg  ac ga gucacu  gac cuc uuccggg uug  u
-----   a  c     u    cuuau    cu  a  g      cu   a   a       g   ga 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr1: 259080675-259080801 [-]

Database links

Mature rno-miR-6317

Accession MIMAT0025054
Description Rattus norvegicus rno-miR-6317 mature miRNA
Sequence 36 - GUGAACCUGAGAGAAAGGCUC - 56
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22605339
    Limonoid compounds inhibit sphingomyelin biosynthesis by preventing CERT protein-dependent extraction of ceramides from the endoplasmic reticulum
    "Hullin-Matsuda F, Tomishige N, Sakai S, Ishitsuka R, Ishii K, Makino A, Greimel P, Abe M, Laviad EL, Lagarde M, Vidal H, Saito T, Osada H, Hanada K, Futerman AH, Kobayashi T"
    "J Biol Chem (2012) 287:24397-24411

  2. PubMed ID: 22908386
    MicroRNAs in the pineal gland: miR-483 regulates melatonin synthesis by targeting arylalkylamine N-acetyltransferase
    "Clokie SJ, Lau P, Kim HH, Coon SL, Klein DC"
    "J Biol Chem (2012) 287:25312-25324