miRBase entry: sma-mir-2b

Stem-loop sma-mir-2b


Accession
MI0021821
Description
Schistosoma mansoni sma-mir-2b precursor miRNA
Gene family
MIPF0000049; mir-2

Literature search
4 open access papers mention sma-mir-2b
(11 sentences)

Sequence

agguggugcgCGUCUCAAGGGACUGUGAAACAucguaaccauuugUAUCACAGCCCUGCUUGGGACACAgccuaccugc
((((((.(((.((((((((((.((((((.(((...........))).))))))))))...)))))).).))))))))..

Structure
--      u  - C      ---    A      A   ucgu 
  aggugg gc g GUCUCA   AGGG CUGUGA ACA    a
  |||||| || | ||||||   |||| |||||| |||    a
  uccauc cg C CAGGGU   UCCC GACACU Ugu    c
cg      -  A A      UCG    -      A   uuac 


Annotation confidence Not enough data
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Genome context
Chr_W: 22875844-22875922 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from sma-mir-2b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sma-miR-2b-5p

Accession MIMAT0025031
Description Schistosoma mansoni sma-miR-2b-5p mature miRNA
Sequence 11 - CGUCUCAAGGGACUGUGAAACA - 32
Evidence experimental
Illumina [2], SOLiD [2]

Mature sma-miR-2b-3p

Accession MIMAT0025032
Description Schistosoma mansoni sma-miR-2b-3p mature miRNA
Sequence 46 - UAUCACAGCCCUGCUUGGGACACA - 69
Evidence experimental
Illumina [2], SOLiD [2]

References

  1. PubMed ID: 21640815
    Genome-wide identification of novel microRNAs and their target genes in the human parasite Schistosoma mansoni
    "de Souza Gomes M, Muniyappa MK, Carvalho SG, Guerra-Sa R, Spillane C"
    "Genomics (2011) 98:96-111

  2. PubMed ID: 24069470
    Sex-biased expression of microRNAs in Schistosoma mansoni
    Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
    PLoS Negl Trop Dis (2013) 7:e2402