miRBase entry: gma-MIR395j

Stem-loop gma-MIR395j


Accession
MI0021716
Description
Glycine max gma-MIR395j precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
15 open access papers mention gma-MIR395j
(70 sentences)

Sequence

ucuguuggcugucccuuggaguuccucugaacgcuucauguuagugagggggguagccaauguaaacugguacccauuauaagccuuauucaAUGAAGUGUUUGGGGGAACUCuuggguucaaacu
......(..((..(((.((((((((((((((((((((((...(((((((.(((((.(((........))))))))........)))))))..)))))))))))))))))))))).)))..))..).

Structure
ucuguu gc  uc   u                      guu       -------g     g   aug 
      g  ug  ccu ggaguuccucugaacgcuucau   agugagg        gggua cca   u
      |  ||  ||| ||||||||||||||||||||||   |||||||        ||||| |||    
      c  ac  ggg uCUCAAGGGGGUUUGUGAAGUA   uuauucc        cccau ggu   a
-----u aa  uu   u                      -ac       gaauauua     -   caa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr1: 4832871-4832996 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from gma-MIR395j
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gma-miR395j

Accession MIMAT0024922
Description Glycine max gma-miR395j mature miRNA
Sequence 93 - AUGAAGUGUUUGGGGGAACUC - 113
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22559273
    Genome organization and characteristics of soybean microRNAs
    Turner M, Yu O, Subramanian S
    BMC Genomics (2012) 13:169