miRBase entry: gma-MIR395h

Stem-loop gma-MIR395h


Accession
MI0021714
Description
Glycine max gma-MIR395h precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
15 open access papers mention gma-MIR395h
(70 sentences)

Sequence

cuguuggcugucuccuggaguuccucugaacgcuucaugugaggggcuagcuauuauaaacguuauaagccuucuuucaAUGAAGUGUUUGGGAGAACUCuugggcucaacca
....(((.((..(((.(((((((.(((((((((((((((.(((((((((((..........)))...)))).)))).).)))))))))))))).))))))).)))..)).)))

Structure
cugu   c  uc   u       c              - u    -    ---   uauu 
    ugg ug  ucc ggaguuc ucugaacgcuucau g gagg ggcu   agc    a
    ||| ||  ||| ||||||| |||||||||||||| | |||| ||||   |||     
    acc ac  ggg uCUCAAG GGGUUUGUGAAGUA c uucu ccga   uug    u
----   a  uc   u       A              a u    u    aua   caaa 


Annotation confidence Not enough data
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Genome context
chr1: 4814429-4814541 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gma-MIR395h
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gma-miR395h

Accession MIMAT0024920
Description Glycine max gma-miR395h mature miRNA
Sequence 80 - AUGAAGUGUUUGGGAGAACUC - 100
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22559273
    Genome organization and characteristics of soybean microRNAs
    Turner M, Yu O, Subramanian S
    BMC Genomics (2012) 13:169