miRBase entry: ppe-MIR6266c

Stem-loop ppe-MIR6266c


Accession
MI0021671
Description
Prunus persica ppe-MIR6266c precursor miRNA
Gene family
MIPF0001657; MIR6266


Sequence

cuuuuucuauUAAAUGCAGGGGCAAAAUGAUauuuuuauauuaaaacuaaaaaaaugaauaaaaaaaucauaccuuuaaaauaacaauaaaagaaaaucaaauuaaaaaaacaauaauaaaguuuuuggggaguagaaaucgagauagaagggggagagagaguuuaauuuuaauuuuuuaguuuuuuaauuuuuaauuuuuuaauucauauuuuaaucaauuuaauauaaaaauaccauuuugcccuugcauuuaacaaaauuga
.........((((((((((((((((((((.(((((((((((((((....((((.((((((.(((((((..(((((((((((..........................................)))))))).)))......(((((.((((((....((((((((.......))))))))..)))))).)))))..))))))).)))))).))))......))))))))))))))).)))))))))))))))))))).........

Structure
cuuuuucua                    A               --acua    a      a       cauaccuuuaaaauaacaauaaaagaaaaucaaauuaaaaaaacaauaauaaaguuuuuggggaguagaaauc     a      ggag        ua 
         uUAAAUGCAGGGGCAAAAUG Uauuuuuauauuaaa      aaaa augaau aaaaaau                                                                         gagau gaaggg    agagaguu  a
         |||||||||||||||||||| |||||||||||||||      |||| |||||| |||||||                                                                         ||||| ||||||    ||||||||  u
         aauuuacguucccguuuuac auaaaaauauaauuu      uuuu uacuua uuuuuua                                                                         uuuua uuuuuu    uuuuuuaa  u
aguuaaaac                    c               aacuaa    a      a       -----------------------------------------------------------------------au     a      --ga        uu 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context
chrG7: 12263799-12264064 [-]

Database links

Mature ppe-miR6266c

Accession MIMAT0027334
Description Prunus persica ppe-miR6266c mature miRNA
Sequence 11 - UAAAUGCAGGGGCAAAAUGAU - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22863067
    High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
    Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
    BMC Genomics (2012) 13:371