Stem-loop ppe-MIR6291b

Accession

MI0021670

Description

Prunus persica ppe-MIR6291b precursor miRNA

Gene family

MIPF0001656; MIR6267

Sequence

aaaugcuacgCUUACCACAUUUUUAUACCAUaccaccuuuuuauaccauaccaccucuuuaauaaagaugauccuauuuuauuggugggcucuaucucuaucagaaauguaguauauaaugugguauaaaaaugugguaaaccuaacauua
.((((.((.(.(((((((((((((((((((((......((.(((((..(((....(((...(((.((((((.((((((.....)))))).)).)))).))).)))...)))))))).))))))))))))))))))))))).).)).)))).

Structure

a    c  c C                     ccaccu  u     ca   cacc   uua   a    -  u      u 
 aaug ua g UUACCACAUUUUUAUACCAUa      uu uauac  uac    ucu   aua agau ga ccuauu u
 |||| || | |||||||||||||||||||||      || |||||  |||    |||   ||| |||| || |||||| a
 uuac au c aaugguguaaaaauauggugu      aa auaug  aug    aga   uau ucua cu gggugg u
a    a  c a                     ------  u     --   -uaa   --c   c    u  c      u 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG7: 5852748-5852898 [+]

Mature ppe-miR6291b

• Accession: MIMAT0027333
• Description: Prunus persica ppe-miR6291b mature miRNA
• Sequence: 11 - CUUACCACAUUUUUAUACCAU - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371