miRBase entry: ppe-MIR6292

Stem-loop ppe-MIR6292


Accession
MI0021664
Description
Prunus persica ppe-MIR6292 precursor miRNA


Sequence

ggugaaguccUAUCUUUUAAUCGUUAGAUCAugcuaaccaauuucauccaacgguuaagagauagagcaucaccu
(((((.((.((((((((((((((((.(((.((........))...))).)))))))))))))))).)).))))).

Structure
-     a  c                A   --C  gcu 
 gguga gu cUAUCUUUUAAUCGUU GAU   Au   a
 ||||| || |||||||||||||||| |||   ||    
 ccacu cg gauagagaauuggcaa cua   ua   a
u     a  a                c   cuu  acc 


Annotation confidence Not enough data
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Comments
Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context
chrG4: 11592569-11592643 [-]

Database links

Mature ppe-miR6292

Accession MIMAT0027327
Description Prunus persica ppe-miR6292 mature miRNA
Sequence 11 - UAUCUUUUAAUCGUUAGAUCA - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22863067
    High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
    Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
    BMC Genomics (2012) 13:371