Stem-loop ppe-MIR171c

Accession

MI0021660

Description

Prunus persica ppe-MIR171c precursor miRNA

Gene family

MIPF0000030; MIR171_1

Literature search

6 open access papers mention ppe-MIR171c
(22 sentences)

Sequence

ugaugauguugauguuggcguggcucaaucaaaucaaacuucucaacuguuuauuggguccuuuaauuUGAUUGAGCCGUGCCAAUAUCauuaucaguc
...(((((.(((((((((((((((((((((((((.(((...(((((.......)))))...))).))))))))))))))))))))))))).)))))...

Structure

uga     u                         c   cuu     cu 
   ugaug ugauguuggcguggcucaaucaaau aaa   cucaa  g
   ||||| ||||||||||||||||||||||||| |||   |||||  u
   acuau aCUAUAACCGUGCCGAGUUAGUuua uuu   ggguu  u
cug     u                         a   ccu     au 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG3: 26848360-26848458 [-]

Mature ppe-miR171c

• Accession: MIMAT0027323
• Description: Prunus persica ppe-miR171c mature miRNA
• Sequence: 69 - UGAUUGAGCCGUGCCAAUAUC - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371