miRBase entry: ppe-MIR6289

Stem-loop ppe-MIR6289


Accession
MI0021659
Description
Prunus persica ppe-MIR6289 precursor miRNA


Sequence

acugacuuagugggucuaaccacucaaaggaagucauuuguuagaaagaagugaaguucuucauuugaauggcuUCCUUUGAAUGGUUAGGCUCAccacaucagc
.((((....(((((((((((((.(((((((((((((((((...(((.(((......))))))...))))))))))))))))).)))))))))))))....)))).

Structure
a    cuua             c                 uua   a   gu 
 cuga    gugggucuaacca ucaaaggaagucauuug   gaa gaa  g
 ||||    ||||||||||||| |||||||||||||||||   ||| |||   
 gacu    cACUCGGAUUGGU AGUUUCCUucgguaagu   cuu cuu  a
c    acac             A                 uua   -   ga 


Annotation confidence Not enough data
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Comments
Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context
chrG3: 4938144-4938248 [-]

Database links

Mature ppe-miR6289

Accession MIMAT0027322
Description Prunus persica ppe-miR6289 mature miRNA
Sequence 75 - UCCUUUGAAUGGUUAGGCUCA - 95
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22863067
    High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
    Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
    BMC Genomics (2012) 13:371