Stem-loop ppe-MIR6286

Accession

MI0021654

Description

Prunus persica ppe-MIR6286 precursor miRNA

Sequence

guuugauacaUUUGAACCAUUGGAUCGUAGUUAuucuuguauaugucaagcuagacaauucucagaucguguaggauucaacggaucggaaaucgaag
.((((((...(((((.((.(((((((.((.....(((......((((......))))......))).....)).))))))).)).))))).)))))).

Structure

g      aca     A  A       G  GUUAu   uguaua    aa 
 uuugau   UUUGA CC UUGGAUC UA     ucu      uguc  g
 ||||||   ||||| || ||||||| ||     |||      ||||   
 aagcua   aggcu gg aacuuag au     aga      acag  c
g      --a     a  c       g  gugcu   cucuua    au 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG3: 12956260-12956357 [-]

Mature ppe-miR6286

• Accession: MIMAT0027317
• Description: Prunus persica ppe-miR6286 mature miRNA
• Sequence: 11 - UUUGAACCAUUGGAUCGUAGUUA - 33
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371