miRBase entry: ppe-MIR6269

Stem-loop ppe-MIR6269


Accession
MI0021630
Description
Prunus persica ppe-MIR6269 precursor miRNA


Sequence

cuucauaucuuaUGUGAAUAGUGAUUGCCAUGGcaacgggugaaaacacgcauuacuuuuugcgagggcagccacuauucacauaaaaguagcug
.........((((((((((((((.(((((.(.((((.((((((.........)))))).)))).).))))).)))))))))))))).........

Structure
cuucauauc              A     A G    c      aaa 
         uuaUGUGAAUAGUG UUGCC U Gcaa ggguga   c
         |||||||||||||| ||||| | |||| ||||||   a
         aauacacuuaucac gacgg a cguu uucauu   c
gucgaugaa              c     g g    u      acg 


Annotation confidence Not enough data
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Comments
Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context
chrG4: 18225135-18225229 [+]

Database links

Mature ppe-miR6269

Accession MIMAT0027293
Description Prunus persica ppe-miR6269 mature miRNA
Sequence 13 - UGUGAAUAGUGAUUGCCAUGG - 33
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22863067
    High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
    Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
    BMC Genomics (2012) 13:371