miRBase entry: ppe-MIR169e

Stem-loop ppe-MIR169e


Accession
MI0021629
Description
Prunus persica ppe-MIR169e precursor miRNA
Gene family
MIPF0000037; MIR169_2

Literature search
7 open access papers mention ppe-MIR169e
(20 sentences)

Sequence

gagucuugcaugaggagauggagaguagauaUGAGCCAAGGAUGACUUGCCAaagcauauggccuuuccacuuguuuaucuucuggcaagcuguccuugguucacguuugcucucuuuucucucaugugagauuca
((((((((((((((((((.(((((((((((.(((((((((((((.((((((((((((..(((.....)))..)))))......))))))).))))))))))))).))))))))))))))).)))))))))))))).

Structure
-              -    u           a             A       ------     ua   c 
 gagucuugcaugag gaga ggagaguagau UGAGCCAAGGAUG CUUGCCA      aagca  ugg c
 |||||||||||||| |||| ||||||||||| ||||||||||||| |||||||      |||||  ||| u
 cuuagaguguacuc cuuu ucucucguuug acuugguuccugu gaacggu      uuugu  acc u
a              u    -           c             c       cuucua     uc   u 


Annotation confidence Not enough data
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Comments
Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context
chrG1: 5644236-5644371 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ppe-MIR169e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppe-miR169e-5p

Accession MIMAT0031172
Description Prunus persica ppe-miR169e-5p mature miRNA
Sequence 32 - UGAGCCAAGGAUGACUUGCCA - 52
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22863067
    High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
    Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
    BMC Genomics (2012) 13:371

  2. PubMed ID: 22909020
    Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
    Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
    BMC Plant Biol (2012) 12:149