Accession
MI0021626
Description
Prunus persica
ppe-MIR171e precursor miRNA
Gene family
MIPF0000030;
MIR171_1
Literature search
6 open access papers mention ppe-MIR171e
(16 sentences)
(16 sentences)
Sequence
aguggcacgugauauuggcacggcucaaucaaaaagcagagcucaagcacuuagagcacugcuuucUUAUUGAACCGGACCAAUAUCccguuaaacc
.((...(((.((((((((..(((.(((((...(((((((.((((.........)))).)))))))...))))).)))..)))))))).)))...)).
.((...(((.((((((((..(((.(((((...(((((((.((((.........)))).)))))))...))))).)))..)))))))).)))...)).
Structure
a ggc u ca c caa a aag gu acg gauauugg cgg ucaau aaagcag gcuc c || ||| |||||||| ||| ||||| ||||||| |||| a ca ugc CUAUAACC GCC AGUUA uuucguc cgag c c aau c AG A UUc a auu
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.
Genome context
chrG3: 21899742-21899838 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ppe-MIR171e
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppe-miR171e
| Accession | MIMAT0027289 |
| Description | Prunus persica ppe-miR171e mature miRNA |
| Sequence | 67 - UUAUUGAACCGGACCAAUAUC - 87 |
| Evidence |
experimental
Illumina [1] |
References
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