Stem-loop ppe-MIR477b

Accession

MI0021625

Description

Prunus persica ppe-MIR477b precursor miRNA

Gene family

MIPF0000216; MIR477

Sequence

cuaaggagaagguuccaacuUCCCUCAAGGGCUCCCAAUAUUccauguuaauacuccgauaucaaaaucaaguaugggaauGUUGGGGGCUCUUUUGGGACGuugaagcccuugcuccuugg
((((((((((((((.((((.((((..((((((((((((((((((......(((((..(((......))).))))).))))))))))))))))))..)))).)))).)).)))).))))))))

Structure

        -    -  c    u    UC                  auguua     cc   au 
cuaaggag aagg uu caac UCCC  AAGGGCUCCCAAUAUUcc      auacu  gau  c
|||||||| |||| || |||| ||||  ||||||||||||||||||      |||||  |||   
gguuccuc uucc ga guuG AGGG  UUCUCGGGGGUUGuaagg      uauga  cua  a
        g    c  a    C    UU                  -----g     -a   aa 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG3: 15489969-15490090 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppe-MIR477b

Mature ppe-miR477b-5p

• Accession: MIMAT0031171
• Description: Prunus persica ppe-miR477b-5p mature miRNA
• Sequence: 21 - UCCCUCAAGGGCUCCCAAUAUU - 42
• Evidence: experimental ; Illumina [2]

Mature ppe-miR477b-3p

• Accession: MIMAT0027288
• Description: Prunus persica ppe-miR477b-3p mature miRNA
• Sequence: 82 - GUUGGGGGCUCUUUUGGGACG - 102
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371


2. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149