miRBase entry: ppe-MIR171h

Stem-loop ppe-MIR171h


Accession
MI0021622
Description
Prunus persica ppe-MIR171h precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
6 open access papers mention ppe-MIR171h
(16 sentences)

Sequence

ugugaauauauacauaaugaagguauuggcgcgccucaauuugaaggcaugguuaauauauggagaccuuagccaugugauucugaUUGAGCCGCGUCAAUAUCUCCuuuugcaucucucuccaugu
((((........))))....(((((((((((((.(((((((.(((.((((((((((............))))))))))..))).))))))).)))))))))))))......................

Structure
--ugugaauauauacauaauga             c       u   -g          uauau 
                      agguauuggcgcg cucaauu gaa  gcaugguuaa     g
                      ||||||||||||| ||||||| |||  ||||||||||      
                      UCUAUAACUGCGC GAGUUag cuu  uguaccgauu     g
uguaccucucucuacguuuuCC             C       u   ag          ccaga 


Annotation confidence Not enough data
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Comments
Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context
chrG3: 21868080-21868206 [+]

Database links

Mature ppe-miR171h

Accession MIMAT0027285
Description Prunus persica ppe-miR171h mature miRNA
Sequence 87 - UUGAGCCGCGUCAAUAUCUCC - 107
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22863067
    High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
    Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
    BMC Genomics (2012) 13:371