miRBase entry: ppe-MIR394a

Stem-loop ppe-MIR394a


Accession
MI0021616
Description
Prunus persica ppe-MIR394a precursor miRNA
Gene family
MIPF0000100; MIR394

Literature search
3 open access papers mention ppe-MIR394a
(4 sentences)

Sequence

ggguuuagcaaagcguuucuuacagaguuuaUUGGCAUUCUGUCCACCUCCucucuuuuucacucccuguguauuagaagauaguacguguggaggugggcauacugccaacugagcucuguuggcuucucuuuguaaaacccu
((((((.((((((.(...((.((((((((((((((((...((((((((((((((((....(((.....)))....)).)))..........)))))))))))...)))))).)))))))))).))...).)))))).)))))).

Structure
-      a      c uuu  u          -      UUC           ----------   -  uuuu   u 
 ggguuu gcaaag g   cu acagaguuua UUGGCA   UGUCCACCUCC          ucu cu    cac c
 |||||| |||||| |   || |||||||||| ||||||   |||||||||||          ||| ||    ||| c
 cccaaa uguuuc c   gg ugucucgagu aaccgu   acggguggagg          aga ga    gug c
u      a      u uuc  u          c      cau           ugugcaugau   a  uuau   u 


Annotation confidence Not enough data
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Comments
Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context
chrG1: 33109945-33110088 [-]

Database links

Mature ppe-miR394a

Accession MIMAT0031167
Description Prunus persica ppe-miR394a mature miRNA
Sequence 32 - UUGGCAUUCUGUCCACCUCC - 51
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22863067
    High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
    Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
    BMC Genomics (2012) 13:371

  2. PubMed ID: 22909020
    Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
    Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
    BMC Plant Biol (2012) 12:149