Stem-loop ppe-MIR482b

Accession

MI0021610

Description

Prunus persica ppe-MIR482b precursor miRNA

Gene family

MIPF0000403; MIR482

Literature search

2 open access papers mention ppe-MIR482b
(6 sentences)

Sequence

aguugcaguagggaguuaggGGAAUGGGAGGAUUGGGAAAAacaugcaccccaaguguucgugaauauuacacaaggaacacaaaaaaggacuuCUUCCCAAACCUCCCAUUCCUAuuauuuccuacaguugcucu
(((.((.(((((((((...((((((((((((.(((((((...............(((((((((.......)))...)))))).............))))))).))))))))))))...))))))))).)).)))..

Structure

--   u  a         uag            A       AAacaugcaccccaa      ---   aa 
  agu gc guagggagu   gGGAAUGGGAGG UUGGGAA               guguuc   gug  u
  ||| || |||||||||   |||||||||||| |||||||               ||||||   |||  a
  ucg ug cauccuuua   UCCUUACCCUCC AACCCUU               cacaag   cac  u
uc   u  a         uuA            A       --Cuucaggaaaaaa      gaa   au 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG1: 30622467-30622602 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from ppe-MIR482b

Mature ppe-miR482b-5p

• Accession: MIMAT0031166
• Description: Prunus persica ppe-miR482b-5p mature miRNA
• Sequence: 21 - GGAAUGGGAGGAUUGGGAAAA - 41
• Evidence: experimental ; Illumina [2]

Mature ppe-miR482b-3p

• Accession: MIMAT0027273
• Description: Prunus persica ppe-miR482b-3p mature miRNA
• Sequence: 95 - CUUCCCAAACCUCCCAUUCCUA - 116
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371


2. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149